TIGR
MPSS
TAIR
MIPS
 
 

AGI number: At4g37930
TIGR annotation:glycine hydroxymethyltransferase / serine hydroxymethyltransferase / serine/threonine aldolase (SHM1)
Data resource: NASCArrays
Normalisation: MAS5

 
  Present call   Marginal call   Absent call   None call (Affymetrix)
       
Experiment Relative expression value St. dev.
 0.10 Seed, mature (SM01)  747.4   8.53
 742 
 730.7 
 0.10 Seed, primary dormant imbibed (SDI1)  76.5   6.37
 69.8 
 84.6 
 80.8 
 0.10 Seed, primary dormant (SDP1)  104.9   9.17
 90.3 
 90.2 
 107.2 
 0.10 Seed, non-dormant (SND1)  386   41.76
 412.6 
 462.1 
 365.5 
 0.70 Seedling (SL01)  3963.9   228.77
 3895 
 4321.2 
 0.70 Seedling (SL02)  6900.7   253.4
 7376.2 
 7290.4 
 0.70 Seedling (SL10)  2212.4   239.11
 2641.4 
 2609.8 
 0.70 Seedling (SL12)  7494.3   856.39
 5801.3 
 6423.2 
 0.70 Hypocotyl (HP01)  468.2   72.05
 604 
 577.9 
 0.70 Hypocotyl (HP02)  251.1   10.85
 270.8 
 253.2 
 1.00 Seedling (SL07)  8796.4   247.67
 8446.2 
 1.00 Seedling (SL09)  6080   213
 5904.8 
 6328.7 
 1.00 Seedling (SL11)  6605.3   206.16
 6498 
 6407.9 
 6883.1 
 1.00 Hypocotyl (HP03)  234.8   17.42
 210.2 
 1.00 Seedling, whole plant (WP04)  8655.3   1267.25
 7157.6 
 6135.8 
 1.00 Cotyledons and Hypocotyl together (SH02)  2805.1   108.32
 2987.9 
 2997.2 
 1.02 Seedling (SL08)  5103.1   194.25
 4828.4 
 1.02 Roots (RT01)  613.1   79.61
 500.5 
 1.02 Lateral roots (RH01)  609   24.56
 578.6 
 627.3 
 1.03 Seedling, whole plant (WP02)  5442.2   995.32
 4507.9 
 6497.3 
 1.05 Rosette (LF11)  6968   72.72
 7104.5 
 7079.7 
 1.14 Rosette (LF12)  8233.6   493.68
 9130.5 
 8324.6 
 1.14 Rosette (LF13)  8618   267.76
 8996.6 
 3.20 Whole plant (WP05)  1610   31.96
 1560.9 
 1620.8 
 3.70 Adult leaf (LF01)  8637.7   396.65
 8817.6 
 9396.8 
 3.70 Adult leaf (LF02)  8880.5   290.65
 8299.2 
 8592.6 
 3.90 Leaf, petiole (PT01)  7110.7   557.59
 8213.3 
 7806.7 
 3.90 Adult leaf (LF03)  6438.3   633.65
 5193.5 
 6021.8 
 3.90 Guard cell-enriched leaf extract (GC01)  6655.8   1493.79
 3867.8 
 4332 
 3.90 Rosette (SH01)  5947.3   777.6
 4461.1 
 4807.3 
 3.90 Roots (RT04)  275.6   43.57
 340.5 
 257.7 
 3.90 Roots (RT05)  338.7   29.07
 325.7 
 283.1 
 3.90 Juvenile leaf (LF14)  4333.3   445.31
 4919.8 
 3955.8 
 3998 
 5.10 Flower, buds (FB01)  5001.4   169.37
 5240.9 
 5.10 Flower, young buds (BY01)  4936.4   602.66
 4424 
 5625 
 5.10 Flower, old buds (BO01)  5413.5   1219.16
 7023.4 
 4632.5 
 5.10 Roots (RT02)  472.3   20.09
 500.7 
 5.10 Pollen grain, microspore (MS01)  542.1   3.84
 536.7 
 5.10 Pollen grain, 2-cellular (BC01)  653.5   9.12
 666.4 
 5.10 Pollen grain, 3-cellular (TC01)  1655.2   55.04
 1733 
 5.10 Pollen grain, mature (MP01)  3762.4   288.24
 3354.8 
 6.00 Leaf (LF08)  8136.9   636.42
 9084.8 
 9346.5 
 6.00 Leaf (LF16)  9421   473.43
 9031.5 
 8478.8 
 6.00 Inflorescence (IN01)  2881   23.74
 2847.5 
 6.10 Leaf (LF10)  8218.7   594.42
 8784.7 
 7596.3 
 6.10 Stem base (ST01)  7552.3   220.45
 7864.1 
 6.10 Stem top (ST02)  5435.2   538.75
 6197.1 
 6.10 Flower, open (FL01)  4614.4   501.65
 5323.8 
 6.30 Silique, young (FS01)  5040.3   296.74
 4620.6 
 6.90 Silique, mature green (SQ01)  8363.6   1004.44
 7957.7 
 6456.8 
 6.90 Seed, fresh (SF01)  159   76.21
 134.4 
 277 
 8.00 Silique, senescing pod tissue (SP01)  4267.5   255.95
 4010.8 
 4522.7 
 Suspension cell culture (SU01)  106.3   1.17
 108.6 
 107.6 
 Suspension cell culture (SU02)  140.2   22.09
 109 
 Xylem (XL01)  273.1   98.86
 386.8 
 470 
 Cork (CR01)  208.5   14.99
 236.9 
 230.9 
 Globular embryo, apical cells (EGA1)  225.7   19.76
 206.4 
 186.2 
 Globular embryo, basal cells (EGB1)  215.1   30.8
 153.8 
 189.8 
 Heart embryo, cotyledons (EHC1)  183   446.57
 148.6 
 938.7 
 Heart embryo, roots (EHR1)  183.8   750.15
 1471.3 
 160.6 
 Torpedo embryo, apical cells (ETA1)  1061.3   97.51
 868.6 
 938.9 
 Torpedo embryo, basal cells (ETB1)  650   297.03
 243.7 
 822.2 
 Torpedo embryo, cotyledons (ETC1)  393.3   188.97
 342.4 
 692.2 
 Torpedo embryo, meristem (ETM1)  220.7   724.83
 429.3 
 1567.4 
 Torpedo embryo, roots (ETR1)  134.1   107.77
 124.1 
 315.5 
Normalisation: MAS5
change to: MAS4
Data resource: NASCArrays
     change to: AtGenExpress